NBIS Metagenomics - A workflow for the analysis of metagenomic data.
The NBIS Metagenomic workflow includes de-novo assembly, annotation, binning and read-based classification. Developed as part of the National Bioinformatics Infrastructure Sweden (NBIS).
The workflow takes as input a list of samples pointing to one or more fastq files and can be run as:
$ snakemake --configfile config.yaml
See the documentation at Readthedocs.
See the code for NBIS Metagenomics here: https://bitbucket.org/scilifelab-lts/nbis-meta