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NBIS Metagenomics - A workflow for the analysis of metagenomic data.

Intro

The NBIS Metagenomic workflow includes de-novo assembly, annotation, binning and read-based classification. Developed as part of the National Bioinformatics Infrastructure Sweden (NBIS).

The workflow takes as input a list of samples pointing to one or more fastq files and can be run as:

$ snakemake --configfile config.yaml

Documentation

See the documentation at Readthedocs.

Contributors

Licence

GPL

See the code for NBIS Metagenomics here: https://bitbucket.org/scilifelab-lts/nbis-meta