Home

Cluster Flow - Automate and standardise bioinformatics analyses on cluster environments

What is Cluster Flow?

Cluster Flow is a command-line program which uses common cluster managers to run analysis pipelines. It currently supports GRIDEngine (SGE), LSF and SLURM as well as running locally on any unix system.

Benefits of using Cluster Flow:

How Cluster Flow differs from other pipeline tools:

Installation

Cluster Flow can be downloaded from http://clusterflow.io. The source code for Cluster Flow is hosted on GitHub: https://github.com/ewels/clusterflow/

Full installation instructions can be found in the documentation.

Documentation

You can read the full documentation at http://clusterflow.io

There are also three introductory videos:

Introduction

Usage

Installation

Contributors

Written whilst working at the Babraham Institute, maintained at SciLifeLab

Licence

GPL v3

See the code for Cluster Flow here: https://github.com/ewels/clusterflow